Dr. Joshua Weitz | Department of Biology

Schwartz DA,Shoemaker WR,Măgălie A,Weitz JS,Lennon JT

Bacteria-phage coevolution with a seed bank.

ISME J. 2023 Aug;17(8):1315-1325. doi: 10.1038/s41396-023-01449-2. Epub 2023 Jun 7

Park SW,Sun K,Abbott S,Sender R,Bar-On YM,Weitz JS,Funk S,Grenfell BT,Backer JA,Wallinga J,Viboud C,Dushoff J

Inferring the differences in incubation-period and generation-interval distributions of the Delta and Omicron variants of SARS-CoV-2.

Proc Natl Acad Sci U S A. 2023 May 30;120(22):e2221887120. doi: 10.1073/pnas.2221887120. Epub 2023 May 22

de Meijere G,Valdano E,Castellano C,Debin M,Kengne-Kuetche C,Turbelin C,Noël H,Weitz JS,Paolotti D,Hermans L,Hens N,Colizza V

Attitudes towards booster, testing and isolation, and their impact on COVID-19 response in winter 2022/2023 in France, Belgium, and Italy: a cross-sectional survey and modelling study.

Lancet Reg Health Eur. 2023 May;28:100614. doi: 10.1016/j.lanepe.2023.100614. Epub 2023 Mar 23

Muratore D,Bertagnolli AD,Bristow LA,Thamdrup B,Weitz JS,Stewart FJ

Microbial and Viral Genome and Proteome Nitrogen Demand Varies across Multiple Spatial Scales within a Marine Oxygen Minimum Zone.

mSystems. 2023 Apr 27;8(2):e0109522. doi: 10.1128/msystems.01095-22. Epub 2023 Mar 15

Park SW,Dushoff J,Grenfell BT,Weitz JS

Intermediate levels of asymptomatic transmission can lead to the highest epidemic fatalities.

PNAS Nexus. 2023 Apr;2(4):pgad106. doi: 10.1093/pnasnexus/pgad106. Epub 2023 Mar 29

Berestycki H,Desjardins B,Weitz JS,Oury JM

Epidemic modeling with heterogeneity and social diffusion.

J Math Biol. 2023 Mar 25;86(4):60. doi: 10.1007/s00285-022-01861-w. Epub 2023 Mar 25

Măgălie A,Schwartz DA,Lennon JT,Weitz JS

Optimal dormancy strategies in fluctuating environments given delays in phenotypic switching.

J Theor Biol. 2023 Mar 21;561:111413. doi: 10.1016/j.jtbi.2023.111413. Epub 2023 Jan 11

Harris JD,Park SW,Dushoff J,Weitz JS

How time-scale differences in asymptomatic and symptomatic transmission shape SARS-CoV-2 outbreak dynamics.

Epidemics. 2023 Mar;42:100664. doi: 10.1016/j.epidem.2022.100664. Epub 2023 Jan 10

Marchi J,Zborowsky S,Debarbieux L,Weitz JS

The dynamic interplay of bacteriophage, bacteria and the mammalian host during phage therapy.

iScience. 2023 Feb 17;26(2):106004. doi: 10.1016/j.isci.2023.106004. Epub 2023 Jan 18

Pineau RM,Demory D,Libby E,Lac DT,Day TC,Bravo P,Yunker PJ,Weitz JS,Bozdag GO,Ratcliff WC

Emergence and maintenance of stable coexistence during a long-term multicellular evolution experiment.

bioRxiv. 2023 Jan 20;:. pii: 2023.01.19.524803. doi: 10.1101/2023.01.19.524803. Epub 2023 Jan 20

Sinclair AH,Taylor MK,Weitz JS,Beckett SJ,Samanez-Larkin GR

Reasons for Receiving or Not Receiving Bivalent COVID-19 Booster Vaccinations Among Adults - United States, November 1-December 10, 2022.

MMWR Morb Mortal Wkly Rep. 2023 Jan 20;72(3):73-75. doi: 10.15585/mmwr.mm7203a5. Epub 2023 Jan 20

Lucia-Sanz A,Magalie A,Rodriguez-Gonzalez R,Leung CY,Weitz JS

Modeling shield immunity to reduce COVID-19 transmission in long-term care facilities.

Ann Epidemiol. 2023 Jan;77:44-52. doi: 10.1016/j.annepidem.2022.10.013. Epub 2022 Nov 7

Shivam S,Weitz JS,Wardi Y

Vaccine stockpile sharing for selfish objectives.

PLOS Glob Public Health. 2022;2(12):e0001312. doi: 10.1371/journal.pgph.0001312. Epub 2022 Dec 5

Maidanik I,Kirzner S,Pekarski I,Arsenieff L,Tahan R,Carlson MCG,Shitrit D,Baran N,Goldin S,Weitz JS,Lindell D

Cyanophages from a less virulent clade dominate over their sister clade in global oceans.

ISME J. 2022 Sep;16(9):2169-2180. doi: 10.1038/s41396-022-01259-y. Epub 2022 Jun 20

Park SW,Bolker BM,Funk S,Metcalf CJE,Weitz JS,Grenfell BT,Dushoff J

The importance of the generation interval in investigating dynamics and control of new SARS-CoV-2 variants.

J R Soc Interface. 2022 Jun;19(191):20220173. doi: 10.1098/rsif.2022.0173. Epub 2022 Jun 15

Dube WC,Kellogg JT,Adams C,Collins MH,Lopman BA,Johnson TM 2nd,Amin AB,Weitz JS,Fridkin SK

Quantifying Risk for SARS-CoV-2 Infection Among Nursing Home Workers for the 2020-2021 Winter Surge of the COVID-19 Pandemic in Georgia, USA.

J Am Med Dir Assoc. 2022 Jun;23(6):942-946.e1. doi: 10.1016/j.jamda.2022.02.014. Epub 2022 Mar 1

Shivam S,Li G,Lucia-Sanz A,Weitz JS

Timescales modulate optimal lysis-lysogeny decision switches and near-term phage reproduction.

Virus Evol. 2022;8(1):veac037. doi: 10.1093/ve/veac037. Epub 2022 May 23

Gupta A,Peng S,Leung CY,Borin JM,Medina SJ,Weitz JS,Meyer JR

Leapfrog dynamics in phage-bacteria coevolution revealed by joint analysis of cross-infection phenotypes and whole genome sequencing.

Ecol Lett. 2022 Apr;25(4):876-888. doi: 10.1111/ele.13965. Epub 2022 Jan 28

Gibson G,Weitz JS,Shannon MP,Holton B,Bryksin A,Liu B,Sieglinger M,Coenen AR,Zhao C,Beckett SJ,Bramblett S,Williamson J,Farrell M,Ortiz A,Abdallah CT,García AJ

Surveillance-to-Diagnostic Testing Program for Asymptomatic SARS-CoV-2 Infections on a Large, Urban Campus in Fall 2020.

Epidemiology. 2022 Mar 1;33(2):209-216. doi: 10.1097/EDE.0000000000001448. Epub

Muratore D,Boysen AK,Harke MJ,Becker KW,Casey JR,Coesel SN,Mende DR,Wilson ST,Aylward FO,Eppley JM,Vislova A,Peng S,Rodriguez-Gonzalez RA,Beckett SJ,Virginia Armbrust E,DeLong EF,Karl DM,White AE,Zehr JP,Van Mooy BAS,Dyhrman ST,Ingalls AE,Weitz JS

Complex marine microbial communities partition metabolism of scarce resources over the diel cycle.

Nat Ecol Evol. 2022 Feb;6(2):218-229. doi: 10.1038/s41559-021-01606-w. Epub 2022 Jan 20

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